Cross-species cell type assignment
Exploration
Marker genes
Cell type matching
Cell type annotation
Load input dataset
Select prepared Embryoid Body dataset
Primate_Embryoid_Bodies
Upload your own file
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UMAP color (all species)
Species specific plots
Select species
human
orang
cyno
rhesus
Color by (categorical)
drop.na
TRUE
FALSE
Color by (gene/ continuous)
drop.na
TRUE
FALSE
Filter cells
Show metadata columns
UMAPs of all species
Species specific plots
Selected cells
Group expression by
Plot gene expression
Find marker genes
Cluster 1
Contrast
Find marker genes
Gene expression
Top cluster markers
Clustering per species
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Reduction Method
pca
Resolution
Run clustering per species
Reciprocal classification
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Input clusters
Run reciprocal classification
Identify orthologous cell type clusters
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Number of orthologous clusters
Identify orthologous clusters
Merge similar cell type clusters
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Merging threshold
Merge similar clusters
Clustering Results
Cluster matching by reciprocal classification
Select column
Select values
+ Add selection criterion
Select cells
Select column to visualize for selected cells
Metadata update
Column to modify or create
New value for selected cells
Update metadata
Download Data
Download Metadata (CSV)
Download Seurat List (RDS)